Hierarchical gene regulatory network

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August undefined, 2024

WebGrowth-regulating factor 5 (GRF5)-mediated gene regulatory network promotes leaf growth and expansion in triploid poplar. New Phytologist (in press) (JIF =8.5) Wei, H. 2024. ... Bottom-up GGM algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways or processes. BMC Bioinformatics 2016, ... Web31 de jan. de 2024 · Keywords: secondary metabolism, plant defense, transcription factor, gene regulatory network, regulon, network motifs, feed-forward loop, feed-back loop. Citation: Barco B and Clay NK (2024) Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors. Front.

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WebWe developed a genome-wide high-throughput system for the discovery and validation of specific transcription factor (TF)-directed hierarchical gene regulatory networks … WebGene regulatory networks are composed of two main components: nodes and edges. The network nodes are the players involved, that is, the genes and their regulators. The … iphone backup software too old

Biological Factor Regulatory Neural Network - ResearchGate

WebHoje · An extended pluripotency gene regulatory network in mouse embryonic stem cells was proposed based on the integrative analysis of CRISPR/Cas9-based functional … Web期刊：Nature Plants文献作者：Ting-Ying Wu; HonZhen Goh; Christina B. Azodi; Shalini Krishnamoorthi; Ming-Jung Liu; Daisuke Urano出版日期：--DOI号：1 ... Evolutionarily … WebModularity or community structure is one of the key properties of biological networks (e.g., gene regulatory networks) as well as general complex networks; plays a crucial role in their topology, evolution, and function; and is recognized as a design principle in biological systems.A module or community is a densely connected subset of nodes that is sparsely … iphone backup password incorrect

[2304.04982] Biological Factor Regulatory Neural Network

PuHox52-mediated hierarchical multilayered gene regulatory …

WebA multilayered hierarchical gene regulatory network (ML-hGRN) mediated by PuHox52 was reverse-engineered and demonstrated to govern AR formation. PuHox52 regulated AR formation through upregulation of nine hub regulators, including a jasmonate signaling path-way gene, PuMYC2, and an auxin signaling pathway gene, PuAGL12. We also identiﬁed Web26 de jun. de 2024 · A multilayered hierarchical gene regulatory network (ML-hGRN) mediated by PuHox52 was reverse-engineered and demonstrated to govern AR … iphone backup read write errorWebGene regulatory networks are generally thought to be made up of a few highly connected nodes and many poorly connected nodes nested within a hierarchical regulatory regime. Thus gene regulatory networks … iphone backup speicherort itunes

"Web10 de jan. de 2024 · This goal can be achieved by building a multilayered hierarchical gene regulatory network (ML-hGRN) starting from a TF after perturbating it (Wei, 2024). Our … " - Hierarchical gene regulatory network

Hierarchical gene regulatory network

Web11 de abr. de 2024 · A gene regulatory network (GRN) describes the hierarchical relationship between transcription factors, associated proteins, and their target genes. Studying GRNs allows us to understand how a plant’s genotype and environment are integrated to regulate downstream physiological responses. Current efforts in plants … Webregulatory relations among the network components [4, 5]. Incorporation of prior knowledge is helpful to improve the reliability and accuracy in computational modelling of …

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WebNature Reviews Genetics - Gene regulatory networks (GRNs) are hierarchically connected sub-circuits composed of genes and thecis-regulatory sequences on which they act. The authors propose that ... Web26 de dez. de 2024 · Common wheat (Triticum aestivum, 2n = 6× = 42, AABBDD) is the staple crop worldwide. Elucidating the gene regulatory network provides essential information for mechanism studies and targeted manipulation of gene activity for breeding. However, it is a challenging task given the extremely large (16 Gb) and complicated …

Web26 de jun. de 2024 · A multilayered hierarchical gene regulatory network (ML-hGRN) mediated by PuHox52 was reverse-engineered and demonstrated to govern AR … Web26 de dez. de 2024 · The gene regulatory network (GRN) is important in revealing the drought tolerance mechanism. Here, to investigate the regulatory mechanism of Shanxin poplar (Populus davidiana × P. bolleana) responding to drought stress, a three-layered GRN was built, and the regulatory relationship between genes in the GRN were predicted …

WebAlbertha J.M. Walhout, in Methods in Cell Biology, 2011 II Gene Regulatory Networks. Gene regulatory networks are composed of two main components: nodes and edges. The network nodes are the players involved, that is, the genes and their regulators. The edges are the physical and/or regulatory relationships between the nodes (Fig. 2 B).Gene … WebIn addition, adaptation to environmental changes should be realized based only on local perception of the robots. In this paper, we propose a hierarchical gene regulatory …

Web1 de set. de 2010 · The visualization of the transcriptional regulatory interactions also revealed a hierarchical structure of the gene-regulatory network of C. glutamicum, consisting of four distinct layers (Kohl et al., 2008). The global regulator GlxR and the master regulators were located in the top regulatory layer of the network, with the exception of …

Web11 de abr. de 2024 · In this paper, we propose the Biological Factor Regulatory Neural Network (BFReg-NN), a generic framework to model relations among biological factors in cell systems. BFReg-NN starts from gene ... iphone backup software redditWebEvolving hierarchical gene regulatory networks for morphogenetic pattern formation of swarm robots. Abstract: Morphogenesis, the biological developmental process of … iphone backup power supplyhttp://www.globalauthorid.com/WebPortal/ArticleView?wd=7A280E01FD3237504DEA9FD27DCA565B4E8A077DE3F9C39E iphone backup takes up too much spaceWeb11 de abr. de 2024 · However, these methods can only incorporate partial biological knowledge, leading to suboptimal performance. In this paper, we propose the Biological Factor Regulatory Neural Network (BFReg-NN), a generic framework to model relations among biological factors in cell systems. BFReg-NN starts from gene expression data … iphone backup software for pchttp://www.globalauthorid.com/WebPortal/ArticleView?wd=7A280E01FD3237504DEA9FD27DCA565B4E8A077DE3F9C39E iphone backup speicherort ändern windows 10Web21 de mai. de 2024 · Whenever we observe phenotypic changes in a TF’s transgenic lines, we are always eager to identify its target genes, collaborative regulators and even upstream high hierarchical regulators. This issue can be addressed by establishing a multilayered hierarchical gene regulatory network (ML-hGRN) centered around a given TF. iphone backup speicherort ändern windows 11WebHá 1 dia · However, these methods can only incorporate partial biological knowledge, leading to suboptimal performance. In this paper, we propose the Biological Factor Regulatory Neural Network (BFReg-NN), a generic framework to model relations among biological factors in cell systems. BFReg-NN starts from gene expression data and is … iphone backup speicherort windows 11